[FUN_Mail] FUN_Mail Digest, Vol 23, Issue 4

Judith Ogilvie via FUN_Mail fun_mail at lists.funfaculty.org
Thu Feb 12 10:34:01 EST 2015

Attached is the sea urchin fertilization calcium wave movie that I use in a
development class.
-Judy Ogilvie

On Thu, Feb 12, 2015 at 6:00 AM, via FUN_Mail <fun_mail at lists.funfaculty.org
> wrote:

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> Today's Topics:
>    1. looking for calcium imaging movies (Jared Young via FUN_Mail)
> ---------- Forwarded message ----------
> From: Jared Young via FUN_Mail <fun_mail at lists.funfaculty.org>
> To: FUN_Mail at lists.funfaculty.org
> Cc:
> Date: Wed, 11 Feb 2015 11:11:15 -0800
> Subject: [FUN_Mail] looking for calcium imaging movies
> Hello Neuro folk,
> I am working on a computer program (actually, my former student is working
> on a computer program) to automatically extract data from calcium imaging
> movies. We have our own set of movies (calcium imaging in one neuron in C.
> elegans) that we have trained the program with. We would like to get other
> movies from a range of cell types/preps/organisms/scopes to see how well
> the program can handle different kinds of images, and to improve the
> program's capacity to do so.
> If any of you are willing to share data with us for this purpose, we would
> be much obliged. We aim to publish the program and make it freely
> available, for those of us without thousands of dollars to spend on image
> analysis programs. Hopefully, our analysis of your data can also be of use
> to you so it can be a win-win. I should note that it does not have to be
> calcium imaging data, just any data in which you are trying to measure
> fluorescence from a particular bright feature in your field of view over
> multiple images.
> If you are interested, please email me.
> Thanks!
> Jared Young
> --
> Jared Young
> Associate Professor, Biology
> Mills College
> Oakland CA 94613
> 510-430-2032
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Judith Mosinger Ogilvie, Ph.D.
Associate Professor of Biology
Co-Director, Neuroscience Program

Department of Biology
Saint Louis University
3507 Laclede Ave.
St. Louis, MO  63103
email:      ogilviej at slu.edu
Phone:     314-977-3965
Fax:         314-977-3658
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